Showing 1 - 20 of 191

Light control of three‐dimensional chromatin organization in soybean
Z. Li ; Landi Sun ; Xiao Xu ; et al.
Plant Biotechnol J

Identification of constrained sequence elements across 239 primate genomes
Lukas F. K. Kuderna ; Jacob C. Ulirsch ; Sabrina Mohd Rashid ; et al.
Nature
Dipòsit Digital de Documents de la UAB
Universitat Autònoma de Barcelona
Kuderna, L F K, Ulirsch, J C, Rashid, S, Ameen, M, Sundaram, L, Hickey, G, Cox, A J, Gao, H, Kumar, A, Aguet, F, Christmas, M J, Clawson, H, Haeussler, M, Janiak, M C, Kuhlwilm, M, Orkin, J D, Bataillon, T, Manu, S, Valenzuela, A, Bergman, J, Rouselle, M, Silva, F E, Agueda, L, Blanc, J, Gut, M, de Vries, D, Goodhead, I, Harris, R A, Raveendran, M, Jensen, A, Chuma, I S, Horvath, J E, Hvilsom, C, Juan, D, Frandsen, P, Schraiber, J G, de Melo, F R, Bertuol, F, Byrne, H, Sampaio, I, Farias, I, Valsecchi, J, Messias, M, da Silva, M N F, Trivedi, M, Rossi, R, Hrbek, T, Andriaholinirina, N, Rabarivola, C J, Zaramody, A, Jolly, C J, Phillips-Conroy, J, Wilkerson, G, Abee, C, Simmons, J H, Fernandez-Duque, E, Kanthaswamy, S, Shiferaw, F, Wu, D, Zhou, L, Shao, Y, Zhang, G, Keyyu, J D, Knauf, S, Le, M D, Lizano, E, Merker, S, Navarro, A, Nadler, T, Khor, C C, Lee, J, Tan, P, Lim, W K, Kitchener, A C, Zinner, D, Gut, I, Melin, A D, Guschanski, K, Schierup, M H, Beck, R M D, Karakikes, I, Wang, K C, Umapathy, G, Roos, C, Boubli, J P, Siepel, A, Kundaje, A, Paten, B, Lindblad-Toh, K, Rogers, J, Marques Bonet, T & Farh, K K H 2024, ' Identification of constrained sequence elements across 239 primate genomes ', Nature, vol. 625, pp. 735–742 . https://doi.org/10.1038/s41586-023-06798-8
Kuderna, L F K, Ulirsch, J C, Rashid, S, Ameen, M, Sundaram, L, Hickey, G, Cox, A J, Gao, H, Kumar, A, Aguet, F, Christmas, M J, Clawson, H, Haeussler, M, Janiak, M C, Kuhlwilm, M, Orkin, J D, Bataillon, T, Manu, S, Valenzuela, A, Bergman, J, Rouselle, M, Silva, F E, Agueda, L, Blanc, J, Gut, M, de Vries, D, Goodhead, I, Harris, R A, Raveendran, M, Jensen, A, Chuma, I S, Horvath, J E, Hvilsom, C, Juan, D, Frandsen, P, Schraiber, J G, de Melo, F R, Bertuol, F, Byrne, H, Sampaio, I, Farias, I, Valsecchi, J, Messias, M, da Silva, M N F, Trivedi, M, Rossi, R, Hrbek, T, Andriaholinirina, N, Rabarivola, C J, Zaramody, A, Jolly, C J, Phillips-Conroy, J, Wilkerson, G, Abee, C, Simmons, J H, Fernandez-Duque, E, Kanthaswamy, S, Shiferaw, F, Wu, D, Zhou, L, Shao, Y, Zhang, G, Keyyu, J D, Knauf, S, Le, M D, Lizano, E, Merker, S, Navarro, A, Nadler, T, Khor, C C, Lee, J, Tan, P, Lim, W K, Kitchener, A C, Zinner, D, Gut, I, Melin, A D, Guschanski, K, Schierup, M H, Beck, R M D, Karakikes, I, Wang, K C, Umapathy, G, Roos, C, Boubli, J P, Siepel, A, Kundaje, A, Paten, B, Lindblad-Toh, K, Rogers, J, Marques Bonet, T & Farh, K K H 2024, 'Identification of constrained sequence elements across 239 primate genomes', Nature, vol. 625, no. 7996, pp. 735-742. https://doi.org/10.1038/s41586-023-06798-8

Positive Selection in Zinc Finger Protein Reveals Genetic Signatures of Adaptive Evolution in Undifferentiated Stem Cells during Evolution in Mammals
Mahboob Ali ; Palwasha Khan ; Mahreen Mahmood ; et al.
Journal of Zoological Systematics and Evolutionary Research. 2023:1-15

eEF1A2 siRNA Suppresses MPP+-Induced Activation of Akt and mTOR and Potentiates Caspase-3 Activation in a Parkinson’s Disease Model
Kawinthra Khwanraj ; Athinan Prommahom ; Permphan Dharmasaroja
ScientificWorldJournal
The Scientific World Journal, Vol 2023 (2023)

Functional characterization and comparative analysis of gene repression-mediating domains interacting with yeast pleiotropic corepressors Sin3, Cyc8 and Tup1
Julia Lettow ; Felix Kliewe ; Rasha Aref ; et al.
Curr Genet

High GLI-1 Expression is a Reliable Indicator of Bad Prognosis in Newly Diagnosed Acute Leukemia Patients
Reham S. El Zaiat ; Reem Nabil ; K. A. Khalifa ; et al.
Indian J Hematol Blood Transfus

Genetic complementation screening and molecular docking give new insight on phosphorylation-dependent Mastl kinase activation
Mehmet Erguven ; Seval Kılıç ; Ezgi Karaca ; et al.
Journal of Biomolecular Structure and Dynamics. 41:8241-8253

Cellular localization of nucleolin determines the prognosis in cancers: a meta-analysis
Supaporn Yangngam ; Jaturawitt Prasopsiri ; Phimmada Hatthakarnkul ; et al.
J Mol Med (Berl)

R-loops at microRNA encoding loci promote co-transcriptional processing of pri-miRNAs in plants
Lucía Gonzalo ; Ileana Tossolini ; Tomasz Gulanicz ; et al.
Nat Plants
Gonzalo, L, Tossolini, I, Gulanicz, T, Cambiagno, D A, Kasprowicz-Maluski, A, Smolinski, D J, Mammarella, M F, Ariel, F D, Marquardt, S, Szweykowska-Kulinska, Z, Jarmolowski, A & Manavella, P A 2022, ' R-loops at microRNA encoding loci promote co-transcriptional processing of pri-miRNAs in plants ', Nature Plants, vol. 8, no. 4, pp. 402-418 . https://doi.org/10.1038/s41477-022-01125-x
CONICET Digital (CONICET)
Consejo Nacional de Investigaciones Científicas y Técnicas
Nature Plants

To be or not be (in the LAD): emerging roles of lamin proteins in transcriptional regulation
Ezequiel Názer
Biochem Soc Trans

The effect of trisomic chromosomes on spatial genome organization and global transcription in embryonic stem cells
Mengfan Li ; Junsheng Yang ; R. Xiao ; et al.
Cell Prolif

Transcriptional condensates: a blessing or a curse for gene regulation?
Martín Stortz ; Diego M. Presman ; Valeria Levi
Commun Biol
Communications Biology, Vol 7, Iss 1, Pp 1-10 (2024)
CONICET Digital (CONICET)
Consejo Nacional de Investigaciones Científicas y Técnicas

ADH-Enhancer: an attention-based deep hybrid framework for enhancer identification and strength prediction
Faiza Mehmood ; Shazia Arshad ; Muhammad Shoaib
Brief Bioinform

Prognostic and predictive value of super-enhancer-derived signatures for survival and lung metastasis in osteosarcoma
Guoquan Huang ; Xuelin Zhang ; Yongan Xu ; et al.
J Transl Med
Journal of Translational Medicine, Vol 22, Iss 1, Pp 1-15 (2024)

The inverse association between DNA gaps and HbA1c levels in type 2 diabetes mellitus
Jirapan Thongsroy ; Apiwat Mutirangura
Sci Rep
Scientific Reports, Vol 13, Iss 1, Pp 1-12 (2023)

Cis-regulatory modes of Ultrabithorax inactivation in butterfly forewings
Amruta Tendolkar ; Anyi Mazo‐Vargas ; Luca Livraghi ; et al.
eLife
eLife, Vol 12 (2024)

Genome-wide chromosomal association of Upf1 is linked to Pol II transcription in Schizosaccharomyces pombe
Sandip De ; David M. Edwards ; Vibha Dwivedi ; et al.
Nucleic Acids Res
Nucleic Acids Research (NAR)

Reduced menin expression leads to decreased ERα expression and is correlated with the occurrence of human luminal B-like and ER-negative breast cancer subtypes
Romain Teinturier ; Razan Abou Ziki ; Loay Kassem ; et al.
Breast Cancer Res Treat

The Utility of SOX2 and AGR2 Biomarkers as Early Predictors of Tamoxifen Resistance in ER-Positive Breast Cancer Patients
Yomna A. Zamzam ; Yosra Abdelmonem Zamzam ; Marwa Aboalsoud ; et al.
Int J Surg Oncol

ANKRD11 variants: KBG syndrome and beyond
Hakon Hakonarson ; Mark B. Mallozzi ; Heiko Reutter ; et al.
Clinical Genetics. 100:187-200