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  • Suche: "spatial transcriptomics"

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1

STHELAR, a multi-tissue dataset linking spatial transcriptomics and histology for cell type annotation
Giraud-Sauveur, Félicie ; Blampey, Quentin ; Benkirane, Hakim ; et al.

Cell type annotation Tumor micro environment Computer vision Cancer Spatial Transcriptomics Whole slide images …
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2

jsPCA: fast, scalable, and interpretable identification of spatial domains and variable genes across multi-slice and multi-sample spatial transcriptomics data
Assali, Ines ; Escande, Paul ; Villoutreix, Paul ; et al.

Spatial transcriptomics... Spatial transcriptomics Spatial statistics Machine learning Spatial Domains Spatially Variable Genes …
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3

RNA2seg: a generalist model for cell segmentation in image-based spatial transcriptomics
Defard, Thomas ; Blondel, Alice ; Bellow, Sebastien ; et al.

Spatial Transcriptomics... Spatial Transcriptomics Cell Segmentation Deep Learning [INFO.INFO-CV]Computer S... Computer Vision and Patt... …
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4

Spatial transcriptomics iterative hierarchical clustering (stIHC): A novel method for identifying spatial gene co‐expression modules
Higgins, Catherine ; Li, Jingyi Jessica ; Carey, Michelle
Quantitative Biology. 13(4)

31 Biological Sciences (... 3102 Bioinformatics and... 3105 Genetics (for-2020) Genetics (rcdc) Biotechnology (rcdc) Human Genome (rcdc) …
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5

Advances in the application of spatial transcriptomics in understanding development and disease
Li, Yao ; Zheng, Qian-Wen ; Li, Mingpeng ; et al.
Molecular and Cellular Biochemistry: An International Journal for Chemical Biology in Health and Disease. :1-16

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6

Linear structure unfolding : application to mouse brain in spatial transcriptomics
Fierville, Morgane ; Lebrigand, Kevin ; Barbry, Pascal ; et al.

Copenaghen, Denmark [INFO.INFO-BI]Computer S... Bioinformatics [q-bio.QM... [INFO.INFO-CG]Computer S... Computational Geometry [... [SDV.BBM.GTP]Life Scienc... …
Konferenz
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7

Melanoma microsatellites exhibit a metastatic signature by spatial transcriptomics and overexpress mediators of immune evasion
Warren, Simon J. ; Xue, Gloria R. ; Zhou, Hong-Ming ; et al.
Virchows Archiv: European Journal of Pathology. 487(6):1391-1400

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8

Advancing muscle aging and sarcopenia research through spatial transcriptomics
Byeong-Don Min ; Chae Young Hwang ; Doyeong Kim ; et al.
Osteoporos Sarcopenia
Osteoporosis and Sarcopenia, Vol 11, Iss 2, Pp 22-31 (2025)

Sarcopenia Spatial transcriptomics Microenvironment RC925-935 Muscle aging Muscle atrophy …
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9

Predicting breast cancer molecular subtypes from H &E-stained histopathological images using a spatial-transcriptomics-based patch filter
Chen, Yuqi ; Liu, Juan ; Wang, Lang ; et al.
Multimedia Tools and Applications: An International Journal. 84(30):36543-36561

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10

SAGE-FM: A lightweight and interpretable spatial transcriptomics foundation model
Zhan, Xianghao ; Xu, Jingyu ; Zheng, Yuanning ; et al.

Machine Learning Genomics Quantitative Methods
Report
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11

Imaging-anchored Multiomics in Cardiovascular Disease: Integrating Cardiac Imaging, Bulk, Single-cell, and Spatial Transcriptomics
Le, Minh H. N. ; Vinh, Tuan ; Nguyen, Thanh-Huy ; et al.

Quantitative Methods Artificial Intelligence Computer Vision and Patt... Machine Learning
Report
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12

STARK denoises spatial transcriptomics images via adaptive regularization
Kubal, Sharvaj ; Graham, Naomi ; Heitz, Matthieu ; et al.

Machine Learning Optimization and Control Statistics Theory 62G08, 46N60, 65K10, 92-...
Report
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13

Decoding epithelial-T cell interactions in colorectal cancer through single-cell and spatial transcriptomics
Yu, Rentao ; Lu, Xinyu ; Yue, Zhuangzhuang
Discover Oncology. 16(1)

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15

Machine learning-enhanced discovery of a basement membrane-related gene signature in glioblastoma via single-cell and Spatial transcriptomics
Liu, Ziyuan ; Yang, Yufan ; Fang, Haiting ; et al.
Journal of Translational Medicine. 23(1)

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16

TransST: transfer learning embedded spatial factor modeling of spatial transcriptomics data
Liu, Shuo Shuo ; Wang, Shikun ; Chen, Yuxuan ; et al.
BMC Bioinformatics. 26(1)

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18

Flexible analysis of spatial transcriptomics data (FAST): a deconvolution approach
Zhang, Meng ; Parker, Joel ; An, Lingling ; et al.
BMC Bioinformatics. 26(1)

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19

Benchmarking cell type annotation methods for 10x Xenium spatial transcriptomics data
Cheng, Jinming ; Jin, Xinyi ; Smyth, Gordon K. ; et al.
BMC Bioinformatics. 26(1)

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20

Winnow-KAN: single-cell RNA-seq location recovery with small-gene-set spatial transcriptomics
Zhang, Yuyang ; Zhang, Qihuang
BMC Bioinformatics. 26(1)

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