• Suche: "spatial transcriptomics"

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1

STHELAR, a multi-tissue dataset linking spatial transcriptomics and histology for cell type annotation
Giraud-Sauveur, Félicie ; Blampey, Quentin ; Benkirane, Hakim ; et al.

Cell type annotation Tumor micro environment Computer vision Cancer Spatial Transcriptomics Whole slide images …
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2

Gene expression cartography of a developing neuronal structure
Tadini, Leonardo ; Younsi, Lilia ; Holguera, Isabel ; et al.

spatial transcriptomics Drosophila optic lobe Novosparc single-cell mRNA sequenc... neurodevelopmental 3D-at... developing nervous syste... …
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3

Mast cells act as pro-angiogenic and pro-tumorigenic players in pituitary gonadotroph tumors
Ilie, Mirela-Diana ; Flores-Martínez, Álvaro ; Chanal, Marie ; et al.
Neuro-Oncology, 2025, ⟨10.1093/neuonc/noaf241⟩

mast cells tumor microen... mast cells tumor microenvironment (... gonadotroph adenomas single-cell transcriptom... spatial transcriptomics …
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4

jsPCA: fast, scalable, and interpretable identification of spatial domains and variable genes across multi-slice and multi-sample spatial transcriptomics data
Assali, Ines ; Escande, Paul ; Villoutreix, Paul ; et al.

Spatial transcriptomics... Spatial transcriptomics Spatial statistics Machine learning Spatial Domains Spatially Variable Genes …
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5

RNA2seg: a generalist model for cell segmentation in image-based spatial transcriptomics
Defard, Thomas ; Blondel, Alice ; Bellow, Sebastien ; et al.

Spatial Transcriptomics... Spatial Transcriptomics Cell Segmentation Deep Learning [INFO.INFO-CV]Computer S... Computer Vision and Patt... …
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6

Spatial transcriptomics iterative hierarchical clustering (stIHC): A novel method for identifying spatial gene co‐expression modules
Higgins, Catherine ; Li, Jingyi Jessica ; Carey, Michelle
Quantitative Biology. 13(4)

31 Biological Sciences (... 3102 Bioinformatics and... 3105 Genetics (for-2020) Genetics (rcdc) Biotechnology (rcdc) Human Genome (rcdc) …
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7

Photocleavable Mass-Tagged Oligonucleotide Probes for Multiplexed and Multiomic Tissue Imaging of Targeted Transcripts
Bell, Jonathan M. ; Yagnik, Gargey ; Dettori, Leonardo G. ; et al.
Journal of the American Society for Mass Spectrometry. 36(8):1621-1640

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8

Integrated spatial and multimodal single‐cell transcriptomics reveal patient‐dependent cell heterogeneity in splenic marginal zone lymphoma
Cerapio, Juan, Pablo ; Gravelle, Pauline ; Quillet‐mary, Anne ; et al.
Journal of Pathology. 263(4-5):442-453

multimodal omics single-cell RNA-sequenci... spatial transcriptomics lymphoma microenvironment [SDV]Life Sciences [q-bi...
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9

Distinct molecular patterns in R6/2 HD mouse brain: Insights from spatiotemporal transcriptomics
Burns, Mara S ; Miramontes, Ricardo ; Wu, Jie ; et al.
Neuron. 113(15)

32 Biomedical and Clinic... 3209 Neurosciences (for-... Neurosciences (rcdc) Human Genome (rcdc) Genetics (rcdc) Huntington's Disease (rc... …
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10

Advances in the application of spatial transcriptomics in understanding development and disease
Li, Yao ; Zheng, Qian-Wen ; Li, Mingpeng ; et al.
Molecular and Cellular Biochemistry: An International Journal for Chemical Biology in Health and Disease. :1-16

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11

Biologically Informed Clustering of Gene Expression Density Patterns and Identification of Spatially Variable Genes
Briz-Redón, Álvaro ; Menafoglio, Alessandra
Journal of Agricultural, Biological and Environmental Statistics. :1-27

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12

Genomic landscapes and therapeutic perspectives of cancer stem cells in the tumor microenvironment
Shrestha, Prabhat ; Lee, Doyoon ; Giri, Anil ; et al.
Journal of Pharmaceutical Investigation. :1-33

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13

Transcriptomic profiling of shed cells enables spatial mapping of cellular turnover in human organs
Barkai, Tal ; Yakubovsky, Oran ; Korem Kohanim, Yael ; et al.
Molecular Systems Biology. 21(12):1778-1792

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14

Single cell and spatial transcriptomic profiling of the type 2 diabetic coronary microcirculation and myocardium
McCallinhart, Patricia E. ; Strawser, Corinne H. ; Garfinkle, Elizabeth A. R. ; et al.
Basic Research in Cardiology. 120(6):1109-1129

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15

Integrative single-cell and spatial transcriptome analysis reveals the functions of TREM2high macrophages and infarct border dynamics post-myocardial infarction
Xiong, Tao ; Chen, Yan ; Liu, Chang ; et al.
Molecular and Cellular Biochemistry: An International Journal for Chemical Biology in Health and Disease. 480(12):6077-6109

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16

Melanoma microsatellites exhibit a metastatic signature by spatial transcriptomics and overexpress mediators of immune evasion
Warren, Simon J. ; Xue, Gloria R. ; Zhou, Hong-Ming ; et al.
Virchows Archiv: European Journal of Pathology. 487(6):1391-1400

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17

Single-cell and spatial transcriptome-based metabolism-immunity interaction network and therapeutic target discovery of matrine in cervical cancer
Zou, Hong ; Xiong, Wang ; He, Yumei
Naunyn-Schmiedeberg's Archives of Pharmacology. :1-24

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18

TP53 mutation predicts resistance to immune checkpoint inhibitor-based therapy in intrahepatic cholangiocarcinoma
Inada, Hiroki ; Kurano, Sotaro ; Miyamoto, Hideaki ; et al.
Journal of Gastroenterology. :1-9

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20

Cancer-associated fibroblast spatial heterogeneity and EMILIN1 expression in the tumor microenvironment modulate TGF-β activity and CD8 + T-cell infiltration in breast cancer
Honda, Chikako Kanno ; Kurozumi, Sasagu ; Fujii, Takaaki ; et al.
Theranostics. 14(5):1873-1885

CAF subpopulations cancer invasion patient outcome spatial transcriptomics tumor immunity MESH: Female …
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