Treffer 1 - 20 von 53

1

The format of FEM output. We list only those fields which are used by BlueRecording.
Joseph James Tharayil ; Jorge Blanco Alonso ; Silvia Farcito ; et al.

Biophysics Cell Biology Genetics Neuroscience Physiology Biotechnology
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2

Methods for the generation of finite element meshes and simulation of electric fields.
Joseph James Tharayil ; Jorge Blanco Alonso ; Silvia Farcito ; et al.

Biophysics Cell Biology Genetics Neuroscience Physiology Biotechnology
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3

Methods for the input of current or conductance noise to the model.
Joseph James Tharayil ; Jorge Blanco Alonso ; Silvia Farcito ; et al.

Biophysics Cell Biology Genetics Neuroscience Physiology Biotechnology
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4

The format of the simulation reports
Joseph James Tharayil ; Jorge Blanco Alonso ; Silvia Farcito ; et al.

Biophysics Cell Biology Genetics Neuroscience Physiology Biotechnology
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5

Comparison of BlueRecording with existing tools
Joseph James Tharayil ; Jorge Blanco Alonso ; Silvia Farcito ; et al.

Biophysics Cell Biology Genetics Neuroscience Physiology Biotechnology
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6

The format of the weights file
Joseph James Tharayil ; Jorge Blanco Alonso ; Silvia Farcito ; et al.

Biophysics Cell Biology Genetics Neuroscience Physiology Biotechnology
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7

The format of the electrode csv file
Joseph James Tharayil ; Jorge Blanco Alonso ; Silvia Farcito ; et al.

Biophysics Cell Biology Genetics Neuroscience Physiology Biotechnology
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8

Simplified calculation methods produce inaccurate signals.
Joseph James Tharayil ; Jorge Blanco Alonso ; Silvia Farcito ; et al.

Biophysics Cell Biology Genetics Neuroscience Physiology Biotechnology
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9

BlueRecording simulates whisker-flick EEG.
Joseph James Tharayil ; Jorge Blanco Alonso ; Silvia Farcito ; et al.

Biophysics Cell Biology Genetics Neuroscience Physiology Biotechnology
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10

Differences in compartment weights explain differences between EEG and ECoG.
Joseph James Tharayil ; Jorge Blanco Alonso ; Silvia Farcito ; et al.

Biophysics Cell Biology Genetics Neuroscience Physiology Biotechnology
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11

BlueRecording simulates resting-state EEG in the rat SSCx model.
Joseph James Tharayil ; Jorge Blanco Alonso ; Silvia Farcito ; et al.

Biophysics Cell Biology Genetics Neuroscience Physiology Biotechnology
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12

Workflow for the BlueRecording Pipeline.
Joseph James Tharayil ; Jorge Blanco Alonso ; Silvia Farcito ; et al.

Biophysics Cell Biology Genetics Neuroscience Physiology Biotechnology
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13

BlueRecording simulates hippocampal LFP.
Joseph James Tharayil ; Jorge Blanco Alonso ; Silvia Farcito ; et al.

Biophysics Cell Biology Genetics Neuroscience Physiology Biotechnology
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14

A. E-Field magnitude, in a cross section of the rat head, induced by current applied to an ECoG recording electrode.
Joseph James Tharayil ; Jorge Blanco Alonso ; Silvia Farcito ; et al.

Biophysics Cell Biology Genetics Neuroscience Physiology Biotechnology
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15

Extracellular signals recorded in a large homogeneous medium.
Joseph James Tharayil ; Jorge Blanco Alonso ; Silvia Farcito ; et al.

Biophysics Cell Biology Genetics Neuroscience Physiology Biotechnology
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16

Procedure for aligning the NeuroRat head model underlying the FEM simulations with the BBP circuit model.
Joseph James Tharayil ; Jorge Blanco Alonso ; Silvia Farcito ; et al.

Biophysics Cell Biology Genetics Neuroscience Physiology Biotechnology
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17

Sensitivity analysis of thermal contact conductance modeling to inform MiniFuel irradiation capsule designs
Meehan, Nicholas A. ; Gorton, Jacob P. ; Capps, Nathan A. ; et al.
In Nuclear Engineering and Design January 2026 446 Part A

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18

BlueRecording: A pipeline for the efficient calculation of extracellular recordings in large-scale neural circuit models.
Tharayil, Joseph James ; Blanco Alonso, Jorge ; Farcito, Silvia ; et al.
PLoS Computational Biology. 5/23/2025, Vol. 21 Issue 5, p1-25. 25p.

LABORATORY rats RECIPROCITY theorems NEURAL circuitry SOFTWARE development too... HIPPOCAMPUS (Brain) COMPUTATIONAL neuroscien...
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19

LogLoss-BERAF: An ensemble-based machine learning model for constructing highly accurate diagnostic sets of methylation sites accounting for heterogeneity in prostate cancer.
Babalyan, K. ; Sultanov, R. ; Generozov, E. ; et al.
PLoS ONE. 11/2/2018, Vol. 13 Issue 11, p1-19. 19p.

PROSTATE cancer DNA methylation MACHINE learning GENE expression DISEASE relapse
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20

BlueRecording: A pipeline for the efficient calculation of extracellular recordings in large-scale neural circuit models
Joseph James Tharayil ; Jorge Blanco Alonso ; Silvia Farcito ; et al.
PLoS Comput Biol
PLoS Computational Biology, Vol 21, Iss 5, p e1013023 (2025)

Neurons QH301-705.5 Models, Neurological Animals Computational Biology Action Potentials
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