• Suche: Bioinformatics programming using Python

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182

pyComBat, a Python tool for batch effects correction in high-throughput molecular data using empirical Bayes methods.
Behdenna, Abdelkader ; Colange, Maximilien ; Haziza, Julien ; et al.
BMC Bioinformatics. 12/7/2023, Vol. 24 Issue 1, p1-9. 9p.

EMPIRICAL Bayes methods PYTHON programming langu... SOURCE code RNA sequencing
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183

FAS: assessing the similarity between proteins using multi-layered feature architectures.
Dosch, Julian ; Bergmann, Holger ; Tran, Vinh ; et al.
Bioinformatics; May2023, Vol. 39 Issue 5, p1-9, 9p

TRANSMEMBRANE domains BIOINFORMATICS software DIRECTED acyclic graphs AMINO acid sequence PYTHON programming langu... PROTEINS
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184

RNAlysis: analyze your RNA sequencing data without writing a single line of code
Guy Teichman ; Dror Cohen ; Or Ganon ; et al.
BMC Biology, Vol 21, Iss 1, Pp 1-10 (2023)

RNA sequencing Clustering analysis Gene set enrichment anal... Data visualization Pipeline Graphical interface …
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185

easyPheno: An easy-to-use and easy-to-extend Python framework for phenotype prediction using Bayesian optimization.
Haselbeck, Florian ; John, Maura ; Grimm, Dominik G
Bioinformatics Advances. 2023, Vol. 3 Issue 1, p1-4. 4p.

PYTHON programming langu... PHENOTYPES BAYESIAN analysis MACHINE learning GENOTYPES
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186

plotnineSeqSuite: a Python package for visualizing sequence data using ggplot2 style.
Cao, Tianze ; Li, Qian ; Huang, Yuexia ; et al.
BMC Genomics; 10/3/2023, Vol. 24 Issue 1, p1-8, 8p

PYTHON programming langu... DEEP learning PROGRAMMING languages ARTIFICIAL intelligence SEQUENCE alignment SOURCE code …
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187

QuickPIV: Efficient 3D particle image velocimetry software applied to quantifying cellular migration during embryogenesis
Marc Pereyra ; Armin Drusko ; Franziska Krämer ; et al.
BMC Bioinformatics, Vol 22, Iss 1, Pp 1-20 (2021)

Particle image velocimet... Light-sheet fluorescence... Collective cell migratio... Julia 3D image analysis Tribolium castaneum …
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188

Noisecut: a python package for noise-tolerant classification of binary data using prior knowledge integration and max-cut solutions.
Samadi, Moein E. ; Mirzaieazar, Hedieh ; Mitsos, Alexander ; et al.
BMC Bioinformatics. 4/20/2024, Vol. 25 Issue 1, p1-19. 19p.

PYTHON programming langu... SUPERVISED learning MACHINE learning PRIOR learning CLASSIFICATION OPTIMAL stopping (Mathem...
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189

Haxe as a Swiss knife for bioinformatic applications: the SeqPHASE case story.
Spöri, Yann ; Flot, Jean-François
Briefings in Bioinformatics; Sep2024, Vol. 25 Issue 5, p1-6, 6p

OBJECT-oriented programm... JAVA programming languag... GRAPHICAL user interface... PROGRAMMING languages SOURCE code PYTHON programming langu...
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190

GITAR: An Open Source Tool for Analysis and Visualization of Hi-C Data
Riccardo Calandrelli ; Qiuyang Wu ; Jihong Guan ; et al.
Genomics, Proteomics & Bioinformatics, Vol 16, Iss 5, Pp 365-372 (2018)

Biology (General) QH301-705.5 Computer applications to... R858-859.7
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191

Pytrf: a python package for finding tandem repeats from genomic sequences.
Du, Lianming ; Sun, Dalin ; Chen, Jiahao ; et al.
BMC Bioinformatics; 6/5/2025, Vol. 26 Issue 1, p1-8, 8p

TANDEM repeats GENETIC regulation GENETIC variation LIFE sciences NEUROLOGICAL disorders PYTHON programming langu...
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192

Developing a Prediction Model for Author Collaboration in Bioinformatics Research Using Graph Mining Techniques and Big Data Applications.
Ebrahimi, Fezzeh ; Asemi, Asefeh ; Shabani, Ahmad ; et al.
International Journal of Information Science & Management. 2021, Vol. 19 Issue 2, p1-18. 18p.

MICROSOFT Excel (Compute... BIG data PYTHON programming langu... PREDICTION models RECOMMENDER systems SCIENCE databases
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193

Staphylococcus aureus viewed from the perspective of 40,000+ genomes
Robert A. Petit III ; Timothy D. Read
PeerJ, Vol 6, p e5261 (2018)

Database MSSA MRSA Antibiotic resistance MLST S. aureus …
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194

Retrieving Good-Quality Salmonella Genomes From the GenBank Database Using a Python Tool, SalmoDEST.
Cherchame, Emeline ; Ilango, Guy ; Cadel-Six, Sabrina
Bioinformatics & Biology Insights. Jan-Dec2022, Vol. 16, p1-9. 9p.

PYTHON programming langu... DATABASES SALMONELLA SINGLE nucleotide polymo...
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195

NGScloud2: optimized bioinformatic analysis using Amazon Web Services.
Mora-Márquez, Fernando ; Luis Vázquez-Poletti, José ; López de Heredia, Unai
PeerJ; Apr2021, p1-24, 24p

AMAZON Web Services Inc. COMPUTER software instal... RNA sequencing CLOUD computing APPLICATION software COMMUNICATION infrastruc... …
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196

PyElph - a software tool for gel images analysis and phylogenetics
Pavel Ana Brânduşa ; Vasile Cristian Ioan
BMC Bioinformatics, Vol 13, Iss 1, p 9 (2012)

Computer applications to... R858-859.7 Biology (General) QH301-705.5
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197

PyGenePlexus: a Python package for gene discovery using network-based machine learning.
Mancuso, Christopher A ; Liu, Renming ; Krishnan, Arjun
Bioinformatics. Feb2023, Vol. 39 Issue 2, p1-3. 3p.

PYTHON programming langu... GENE regulatory networks SUPERVISED learning INTERNET servers MACHINE learning GENES …
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198

Teaching Python programming for bioinformatics with Jupyter notebook in the Post‐COVID‐19 era.
Gupta, Yash Munnalal ; Kirana, Satwika Nindya ; Homchan, Somjit ; et al.
Biochemistry & Molecular Biology Education; Sep2023, Vol. 51 Issue 5, p537-539, 3p

COVID-19 pandemic DNA sequencing BLENDED learning LEARNING DISTANCE education PYTHON programming langu...
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199

Reproducible acquisition, management and meta-analysis of nucleotide sequence (meta)data using q2-fondue.
Ziemski, Michal ; Adamov, Anja ; Kim, Lina ; et al.
Bioinformatics. 11/15/2022, Vol. 38 Issue 22, p5081-5091. 11p.

NUCLEOTIDE sequence PYTHON programming langu... PROTEIN-protein interact... DOWNLOADING DATA management PUBLIC administration …
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200

TextFormats: Simplifying the definition and parsing of text formats in bioinformatics.
Gonnella, Giorgio
PLoS ONE; 5/26/2022, Vol. 17 Issue 5, p1-17, 17p

PYTHON programming langu... BIOINFORMATICS software OPEN source software GRAPHICAL user interface... PROGRAMMING languages BIOINFORMATICS …
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