• Suche: Bioinformatics programming using Python

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201

ExRec: a python pipeline for generating recombination-filtered multi-locus datasets.
Potter, Sam McCarthy ; Jennings, W Bryan
Bioinformatics Advances; 2023, Vol. 3 Issue 1, p1-5, 5p

PHYLOGENY PYTHON programming langu... AUTOMATION COMPUTATIONAL biology BIOINFORMATICS
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202

Dimension Reduction Forests: Local Variable Importance Using Structured Random Forests.
Loyal, Joshua Daniel ; Zhu, Ruoqing ; Cui, Yifan ; et al.
Journal of Computational & Graphical Statistics. Oct-Dec2022, Vol. 31 Issue 4, p1104-1113. 10p.

BEIJING (China) RANDOM forest algorithms PYTHON programming langu... PARTICULATE matter INDIVIDUALIZED medicine MACHINE learning …
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203

ORCO: Ollivier-Ricci Curvature-Omics—an unsupervised method for analyzing robustness in biological systems.
Simhal, Anish K ; Weistuch, Corey ; Murgas, Kevin ; et al.
Bioinformatics; Mar2025, Vol. 41 Issue 3, p1-4, 4p

BIOLOGICAL systems BIOLOGICAL networks PYTHON programming langu... BRAIN imaging DRUG target
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204

Adversarial training improves model interpretability in single-cell RNA-seq analysis.
Sadria, Mehrshad ; Layton, Anita ; Bader, Gary D
Bioinformatics Advances; 2023, Vol. 3 Issue 1, p1-10, 10p

RNA sequencing COMPUTATIONAL biology DEEP learning PYTHON programming langu... BIOINFORMATICS
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205

PyChelator: a Python-based Colab and web application for metal chelator calculations.
Spahiu, Emrulla ; Kastrati, Esra ; Amrute-Nayak, Mamta
BMC Bioinformatics. 7/16/2024, Vol. 25 Issue 1, p1-8. 8p.

WEB-based user interface... PYTHON programming langu... STABILITY constants APPLICATION software METAL ions METALS
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206

Prediction of pathogenic single amino acid substitutions using molecular fragment descriptors.
Zadorozhny, Anton ; Smirnov, Anton ; Filimonov, Dmitry ; et al.
Bioinformatics; Aug2023, Vol. 39 Issue 8, p1-8, 8p

AMINO acids PROTEIN-protein interact... NUCLEOTIDE sequencing AMINO acid residues STRUCTURE-activity relat... AMINO acid sequence …
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207

Teaching Python programming for bioinformatics with Jupyter notebook in the Post‐COVID‐19 era
Yash Munnalal Gupta ; Satwika Nindya Kirana ; Somjit Homchan ; et al.
Biochemistry and Molecular Biology Education. 51:537-539

4. Education
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208

The probability of edge existence due to node degree: a baseline for network-based predictions.
Zietz, Michael ; Himmelstein, Daniel S ; Kloster, Kyle ; et al.
GigaScience. 2024, Vol. 13 Issue 1, p1-11. 11p.

KNOWLEDGE graphs PYTHON programming langu... DRUG repositioning RESEARCH personnel PRIOR learning BIOLOGICAL networks
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209

Physcraper: a Python package for continually updated phylogenetic trees using the Open Tree of Life.
Sánchez-Reyes, Luna L. ; Kandziora, Martha ; McTavish, Emily Jane
BMC Bioinformatics. 6/29/2021, Vol. 22 Issue 1, p1-13. 13p.

DNA sequencing PYTHON programming langu... SEQUENCE alignment PHYLOGENY
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210

Detecting biased validation of predictive models in the positive-unlabeled setting: disease gene prioritization case study.
Molotkov, Ivan ; Artomov, Mykyta
Bioinformatics Advances; 2023, Vol. 3 Issue 1, p1-10, 10p

BIOLOGICAL networks PYTHON programming langu... BIOLOGICAL databases COMPUTATIONAL biology BIOINFORMATICS
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211

Efficient parameter estimation for ODE models of cellular processes using semi-quantitative data.
Dorešić, Domagoj ; Grein, Stephan ; Hasenauer, Jan
Bioinformatics. 2024 Supplement, Vol. 40, pi558-i566. 9p.

PARAMETER estimation NONLINEAR systems PYTHON programming langu... SIMULATION methods & mod... MOTIVATION (Psychology)
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212

Enhancing non-Perl Bioinformatic Applications with Perl: Building Novel, Component-Based Applications Using Object Orientation, PDL, Alien, FFI,Inline and OpenMP
Argyropoulos, Christos
The Science Perl Journal - Published in Austin, Texas, USA. 1

Software Engineering (cs... FOS: Computer and inform... Computer Science - Softw... Computer Science - Mathe... Mathematical Software (c...
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213

TRAMbio: a flexible python package for graph rigidity analysis of macromolecules.
Handke, Nicolas ; Gatter, Thomas ; Reinhardt, Franziska ; et al.
BMC Bioinformatics. 10/28/2025, Vol. 26 Issue 1, p1-23. 23p.

MOLECULAR biology PROTEIN conformation CONSTRAINT algorithms PYTHON programming langu... PROTEIN folding MACROMOLECULES
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214

Poincaré and SimBio: a versatile and extensible Python ecosystem for modeling systems
Mauro Silberberg ; Henning Hermjakob ; Rahuman S. Malik-Sheriff ; et al.
Bioinformatics

FOS: Computer and inform... Extensibility ODE Bioinformatics Models, Biological SBML …
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215

Mining hidden knowledge: embedding models of cause–effect relationships curated from the biomedical literature.
Krämer, Andreas ; Green, Jeff ; Billaud, Jean-Noël ; et al.
Bioinformatics Advances. 2022, Vol. 2 Issue 1, p1-10. 10p.

PYTHON programming langu... MACHINE learning BIOINFORMATICS GENE expression CARCINOGENESIS
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216

Meta-Analysis of Antibacterial Effects of Silver Nanoparticles (AgNPs) Obtained by Green Synthesis Using Centaurea Species
Aysun Ergene ; Şule Ocak
Volume: 14, Issue: 21254-1268
Bitlis Eren Üniversitesi Fen Bilimleri Dergisi

Bakteriyoloji Biyoinformatik Yöntem Ge... Meta-Analysis Antibacterial effects Silver nanoparticles Green synthesis …
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217

AXZ viewer: a web application to visualize unprocessed AFM-IR data Open Access.
Duverger, Wouter ; Ramer, Georg ; Louros, Nikolaos ; et al.
Bioinformatics. Oct2025, Vol. 41 Issue 10, p1-5. 5p.

DATA visualization ATOMIC force microscopy PYTHON programming langu... WEB-based user interface... METADATA OPEN scholarship …
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218

Prediction of Drug-Likeness Using Deep Autoencoder Neural Networks
Qiwan Hu ; Mudong Feng ; Luhua Lai ; et al.
Front Genet
Frontiers in Genetics, Vol 9 (2018)

Artificial neural networ... FOS: Computer and inform... 0301 basic medicine Pharmacology, Toxicology... Artificial intelligence Drug Target Identificati... …
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219

Avogadro: an advanced semantic chemical editor, visualization, and analysis platform
Hanwell Marcus D ; Curtis Donald E ; Lonie David C ; et al.
Journal of Cheminformatics, Vol 4, Iss 1, p 17 (2012)

Information technology T58.5-58.64 Chemistry QD1-999
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220

vcf2gwas - Python API for comprehensive GWAS analysis using GEMMA
Frank Vogt ; Gautam Shirsekar ; Detlef Weigel
Bioinformatics

0301 basic medicine 0303 health sciences 03 medical and health sc... Genotype Reproducibility of Resul... Programming Languages …
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