• Suche: Bioinformatics programming using Python

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221

PPLK+C: A Bioinformatics Tool for Predicting Peptide Ligands of Potassium Channels Based on Primary Structure Information.
Lissabet, Jorge Félix Beltrán ; Belén, Lisandra Herrera ; Farias, Jorge G.
Interdisciplinary Sciences: Computational Life Sciences; Sep2020, Vol. 12 Issue 3, p258-263, 6p

ION channels PYTHON programming langu... RANDOM forest algorithms CELL membranes BIOINFORMATICS software SUPPORT vector machines …
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222

SampleExplorer: using language models to discover relevant transcriptome data
Wee Loong Chin ; Timo Lassmann
Bioinformatics

0301 basic medicine Applications Note Metadata 03 medical and health sc... Gene Expression Profilin... Databases, Genetic …
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223

Poincaré and SimBio: a versatile and extensible Python ecosystem for modeling systems.
Silberberg, Mauro ; Hermjakob, Henning ; Malik-Sheriff, Rahuman S ; et al.
Bioinformatics. Aug2024, Vol. 40 Issue 8, p1-6. 6p.

PYTHON programming langu... SYSTEMS biology DYNAMICAL systems CHEMICAL engineering SOURCE code
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224

MDPath: Unraveling Allosteric Communication Paths of Drug Targets through Molecular Dynamics Simulations (Updated June 13, 2025).
Drug Week; 7/4/2025, p998-998, 1p

G protein coupled recept... ALLOSTERIC regulation PYTHON programming langu... STRUCTURAL bioinformatic... DRUG target PROTEIN-ligand interacti... …
Zeitschrift
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225

BioCoder: a benchmark for bioinformatics code generation with large language models
Xiangru Tang ; Bill Qian ; Rick Gao ; et al.
Bioinformatics

FOS: Computer and inform... Computer Science - Machi... Computer Science - Compu... Computer Science - Artif... Computational Biology 02 engineering and techn... …
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226

Melodia: a Python library for protein structure analysis.
Montalvão, Rinaldo W ; Pitt, William R ; Pinheiro, Vitor B ; et al.
Bioinformatics. Jul2024, Vol. 40 Issue 7, p1-5. 5p.

PYTHON programming langu... DRUG discovery PROTEIN structure KNOT theory PROTEIN engineering
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227

pyaging: a Python-based compendium of GPU-optimized aging clocks.
Camillo, Lucas Paulo de Lima
Bioinformatics. Apr2024, Vol. 40 Issue 4, p1-7. 7p.

PYTHON programming langu... MACHINE learning AGING SOFTWARE development too... CAENORHABDITIS elegans DNA methylation
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228

PhyloSophos: a high-throughput scientific name mapping algorithm augmented with explicit consideration of taxonomic science, and its application on natural product (NP) occurrence database processing.
Cho, Min Hyung ; Cho, Kwang-Hwi ; No, Kyoung Tai
BMC Bioinformatics; 12/14/2023, Vol. 24 Issue 1, p1-25, 25p

DATABASES NATURAL products INFORMATION resources PYTHON programming langu... SYSTEMS biology DATA integration
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229

Umibato: estimation of time-varying microbial interaction using continuous-time regression hidden Markov model.
Hosoda, Shion ; Fukunaga, Tsukasa ; Hamada, Michiaki
Bioinformatics; 2021 Supplement, Vol. 37, pi16-i24, 9p

MARKOV processes KRIGING LOTKA-Volterra equations ALGORITHMS GUT microbiota PYTHON programming langu...
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230

A clustering package for nucleotide sequences using Laplacian Eigenmaps and Gaussian Mixture Model
Serge Moulin ; Maël Kerbiriou ; Franz Chouly ; et al.
Computers in Biology and Medicine. 93:66-74

0301 basic medicine Nematoda [INFO.INFO-SE]Computer S... [INFO.INFO-IU]Computer S... [INFO.INFO-CR]Computer S... Gaussian Mixture Model …
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231

MultiPaths: a Python framework for analyzing multi-layer biological networks using diffusion algorithms.
Marín-Llaó, Josep ; Mubeen, Sarah ; Perera-Lluna, Alexandre ; et al.
Bioinformatics. Jan2021, Vol. 37 Issue 1, p137-139. 3p.

BIOLOGICAL networks MORPHOLOGY PYTHON programming langu... ALGORITHMS HIGH throughput screenin... INTERNET servers
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232

Assessing heterogeneity in spatial data using the HTA index with applications to spatial transcriptomics and imaging.
Levy-Jurgenson, Alona ; Tekpli, Xavier ; Yakhini, Zohar
Bioinformatics; Nov2021, Vol. 37 Issue 21, p3796-3804, 9p

CANCER prognosis HETEROGENEITY PYTHON programming langu... RNA sequencing GAUSSIAN distribution MOLECULAR biology …
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233

OCTID: a one-class learning-based Python package for tumor image detection
Yanan Wang ; Litao Yang ; Geoffrey I Webb ; et al.
Bioinformatics. 37:3986-3988

Machine Learning 0301 basic medicine 0303 health sciences 03 medical and health sc... Neoplasms Image Processing, Comput... …
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234

I2b2-etl: Python application for importing electronic health data into the informatics for integrating biology and the bedside platform.
Wagholikar, Kavishwar B ; Ainsworth, Layne ; Zelle, David ; et al.
Bioinformatics. 10/15/2022, Vol. 38 Issue 20, p4833-4836. 4p.

PYTHON programming langu... MEDICAL informatics COLLEGE majors HEALTH facilities CONSORTIA BIOLOGY
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235

Comparative Network Reconstruction using mixed integer programming
Bertram Klinger ; Anja Sieber ; Nils Blüthgen ; et al.
Bioinformatics

0301 basic medicine Computer 0303 health sciences 03 medical and health sc... Neural Networks SDG 3 - Good Health and... …
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236

vcf2gwas: Python API for comprehensive GWAS analysis using GEMMA.
Vogt, Frank ; Shirsekar, Gautam ; Weigel, Detlef
Bioinformatics. 2/1/2022, Vol. 38 Issue 3, p839-840. 2p.

GENOME-wide association... PYTHON programming langu... SOURCE code
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237

SBMLDiagrams: a python package to process and visualize SBML layout and render
Jin Xu ; Jessie Jiang ; Herbert M Sauro
Bioinformatics

0301 basic medicine Applications Note 03 medical and health sc... Systems Biology FOS: Biological sciences 0206 medical engineering …
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238

PAX2GRAPHML: a python library for large-scale regulation network analysis using BioPAX.
Moreews, François ; Simon, Hugo ; Siegel, Anne ; et al.
Bioinformatics. 12/15/2021, Vol. 37 Issue 24, p4889-4891. 3p.

PYTHON programming langu...
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239

A comparison of common programming languages used in bioinformatics.
Fourment, Mathieu ; Gillings, Michael R.
BMC Bioinformatics; 2008, Vol. 9, Special section p1-9, 9p, 1 Chart, 5 Graphs

PROGRAMMING languages ALGORITHMS BIOINFORMATICS C (Computer program lang... C++ JAVA programming languag... …
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240

Radni okvir Mendelove randomizacije u programskom jeziku Python
Matošić, Jurica ; Vladimir, Klemo

bioinformatika Mendelova Randomizacija OpenGWAS Mendelian Randomization causal analysis TwoSampleMR …
Dissertation
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