Treffer: Cerebral: a Cytoscape plugin for layout of and interaction with biological networks using subcellular localization annotation.

Title:
Cerebral: a Cytoscape plugin for layout of and interaction with biological networks using subcellular localization annotation.
Authors:
Barsky A; Department of Computer Science, University of British Columbia, Vancouver, British Columbia, Canada., Gardy JL, Hancock RE, Munzner T
Source:
Bioinformatics (Oxford, England) [Bioinformatics] 2007 Apr 15; Vol. 23 (8), pp. 1040-2. Date of Electronic Publication: 2007 Feb 19.
Publication Type:
Journal Article; Research Support, Non-U.S. Gov't
Language:
English
Journal Info:
Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE
Imprint Name(s):
Original Publication: Oxford : Oxford University Press, c1998-
MeSH Terms:
Cell Physiological Phenomena* , Models, Biological* , Software* , User-Computer Interface*, Proteome/*metabolism , Signal Transduction/*physiology , Subcellular Fractions/*metabolism, Algorithms ; Computer Graphics ; Computer Simulation ; Programming Languages
Substance Nomenclature:
0 (Proteome)
Entry Date(s):
Date Created: 20070221 Date Completed: 20070522 Latest Revision: 20130520
Update Code:
20250114
DOI:
10.1093/bioinformatics/btm057
PMID:
17309895
Database:
MEDLINE

Weitere Informationen

Unlabelled: Cerebral (Cell Region-Based Rendering And Layout) is an open-source Java plugin for the Cytoscape biomolecular interaction viewer. Given an interaction network and subcellular localization annotation, Cerebral automatically generates a view of the network in the style of traditional pathway diagrams, providing an intuitive interface for the exploration of a biological pathway or system. The molecules are separated into layers according to their subcellular localization. Potential products or outcomes of the pathway can be shown at the bottom of the view, clustered according to any molecular attribute data-protein function-for example. Cerebral scales well to networks containing thousands of nodes.
Availability: http://www.pathogenomics.ca/cerebral