Treffer: The graphical representation of protein sequences based on the physicochemical properties and its applications.
Title:
The graphical representation of protein sequences based on the physicochemical properties and its applications.
Authors:
Source:
Journal of computational chemistry [J Comput Chem] 2010 Aug; Vol. 31 (11), pp. 2136-42.
Publication Type:
Journal Article; Research Support, Non-U.S. Gov't
Language:
English
Journal Info:
Publisher: Wiley Country of Publication: United States NLM ID: 9878362 Publication Model: Print Cited Medium: Internet ISSN: 1096-987X (Electronic) Linking ISSN: 01928651 NLM ISO Abbreviation: J Comput Chem Subsets: MEDLINE
Imprint Name(s):
Original Publication: New York : Wiley,
MeSH Terms:
Substance Nomenclature:
0 (Amino Acids)
EC 1.6.99.3 (NADH Dehydrogenase)
EC 1.6.99.3 (NADH Dehydrogenase)
Entry Date(s):
Date Created: 20100313 Date Completed: 20101115 Latest Revision: 20161125
Update Code:
20250114
DOI:
10.1002/jcc.21501
PMID:
20225279
Database:
MEDLINE
Weitere Informationen
Based on the chaos game representation, a 2D graphical representation of protein sequences was introduced in which the 20 amino acids are rearranged in a cyclic order according to their physicochemical properties. The Euclidean distances between the corresponding amino acids from the 2-D graphical representations are computed to find matching (or conserved) fragments of amino acids between the two proteins. Again, the cumulative distance of the 2D-graphical representations is defined to compare the similarity of protein. And, the examination of the similarity among sequences of the ND5 proteins of nine species shows the utility of our approach.
((c) 2010 Wiley Periodicals, Inc.)