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Treffer: Silicosection and elucidation of the plant circadian clock using Bayesian classifiers and new genemining algorithm.

Title:
Silicosection and elucidation of the plant circadian clock using Bayesian classifiers and new genemining algorithm.
Authors:
Smieszek S; Department of Molecular Biology, Royal Holloway, University of London, Surrey, UK. s.smieszek@rhul.ac.uk, Richter R, Przychodzen B, Maciejewski J
Source:
Advances in experimental medicine and biology [Adv Exp Med Biol] 2010; Vol. 680, pp. 43-56.
Publication Type:
Journal Article
Language:
English
Journal Info:
Publisher: Kluwer Academic/Plenum Publishers Country of Publication: United States NLM ID: 0121103 Publication Model: Print Cited Medium: Print ISSN: 0065-2598 (Print) Linking ISSN: 00652598 NLM ISO Abbreviation: Adv Exp Med Biol Subsets: MEDLINE
Imprint Name(s):
Publication: 1998- : New York : Kluwer Academic/Plenum Publishers
Original Publication: New York, Plenum Press.
Substance Nomenclature:
0 (Arabidopsis Proteins)
0 (GATA Transcription Factors)
Entry Date(s):
Date Created: 20100925 Date Completed: 20110203 Latest Revision: 20161109
Update Code:
20250114
DOI:
10.1007/978-1-4419-5913-3_6
PMID:
20865485
Database:
MEDLINE

Weitere Informationen

Datasets with a high dimensional feature space, advancing statistical methods, and computational efficiency were analyzed to uncover the rules of the circadian rhythms. The aim of the study was to uncover the identity, the dynamic behavior, and the interactions among the components of the circadian clock. Transcriptional profiling has exposed the regulon conferring benefits for circadian biology and bioinformatics. Circadian plant time course gene expression data was examined, this was the prerequisite for Naive Bayes classifiers which were trained and led to expression model with a success rate of up to 87%. The model showed new combinatorial rules, including presence of elements and their frequencies in driving particular phases. Implementation of Genemining V2.3 multipotent algorithm showed the specific combinations of elements responsible for expression patterns, highlighting the role of GATA motifs. State-of-the-art technologies allowed for a model in silico, the first such model was made using time course circadian data.