• PathVisio-MIM: PathVisio plugi...

Treffer: PathVisio-MIM: PathVisio plugin for creating and editing Molecular Interaction Maps (MIMs).

Title:
PathVisio-MIM: PathVisio plugin for creating and editing Molecular Interaction Maps (MIMs).
Authors:
Luna A; Laboratory of Molecular Pharmacology, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA. margot@discover.nci.nih.gov, Sunshine ML, van Iersel MP, Aladjem MI, Kohn KW
Source:
Bioinformatics (Oxford, England) [Bioinformatics] 2011 Aug 01; Vol. 27 (15), pp. 2165-6. Date of Electronic Publication: 2011 Jun 02.
Publication Type:
Journal Article; Research Support, N.I.H., Intramural; Research Support, Non-U.S. Gov't
Language:
English
Journal Info:
Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE
Imprint Name(s):
Original Publication: Oxford : Oxford University Press, c1998-
MeSH Terms:
Metabolic Networks and Pathways* , Software*, Computational Biology/*methods, Computer Graphics ; Molecular Sequence Annotation/methods ; Programming Languages ; User-Computer Interface
References:
Mol Biol Cell. 2006 Jan;17(1):1-13. (PMID: 16267266)
BMC Bioinformatics. 2011 May 17;12:167. (PMID: 21586134)
BMC Syst Biol. 2010 May 17;4:65. (PMID: 20478018)
Nat Biotechnol. 2009 Aug;27(8):735-41. (PMID: 19668183)
BMC Bioinformatics. 2008 Sep 25;9:399. (PMID: 18817533)
Grant Information:
United States Intramural NIH HHS
Entry Date(s):
Date Created: 20110604 Date Completed: 20111007 Latest Revision: 20211020
Update Code:
20250114
PubMed Central ID:
PMC3137219
DOI:
10.1093/bioinformatics/btr336
PMID:
21636591
Database:
MEDLINE

Weitere Informationen

Motivation: A plugin for the Java-based PathVisio pathway editor has been developed to help users draw diagrams of bioregulatory networks according to the Molecular Interaction Map (MIM) notation. Together with the core PathVisio application, this plugin presents a simple to use and cross-platform application for the construction of complex MIM diagrams with the ability to annotate diagram elements with comments, literature references and links to external databases. This tool extends the capabilities of the PathVisio pathway editor by providing both MIM-specific glyphs and support for a MIM-specific markup language file format for exchange with other MIM-compatible tools and diagram validation.
Availability: The PathVisio-MIM plugin is freely available and works with versions of PathVisio 2.0.11 and later on Windows, Mac OS X and Linux. Information about MIM notation and the MIMML format is available at http://discover.nci.nih.gov/mim. The plugin, along with diagram examples, instructions and Java source code, may be downloaded at http://discover.nci.nih.gov/mim/mim_pathvisio.html.