Result: Vanderbilt University Institute of Imaging Science Center for Computational Imaging XNAT: A multimodal data archive and processing environment.

Title:
Vanderbilt University Institute of Imaging Science Center for Computational Imaging XNAT: A multimodal data archive and processing environment.
Authors:
Harrigan RL; Electrical Engineering, Vanderbilt University, Nashville, TN 37235, USA. Electronic address: rob.l.harrigan@vanderbilt.edu., Yvernault BC; Electrical Engineering, Vanderbilt University, Nashville, TN 37235, USA., Boyd BD; Psychiatry, Vanderbilt University, Nashville, TN 37235, USA., Damon SM; Electrical Engineering, Vanderbilt University, Nashville, TN 37235, USA., Gibney KD; Institute of Imaging Science, Vanderbilt University, Nashville, TN 37235, USA., Conrad BN; Institute of Imaging Science, Vanderbilt University, Nashville, TN 37235, USA; Radiology and Radiological Sciences, Vanderbilt University, Nashville, TN 37235, USA., Phillips NS; Institute of Imaging Science, Vanderbilt University, Nashville, TN 37235, USA; Radiology and Radiological Sciences, Vanderbilt University, Nashville, TN 37235, USA., Rogers BP; Institute of Imaging Science, Vanderbilt University, Nashville, TN 37235, USA; Radiology and Radiological Sciences, Vanderbilt University, Nashville, TN 37235, USA; Biomedical Engineering, Vanderbilt University, Nashville, TN 37235, USA; Psychiatry, Vanderbilt University, Nashville, TN 37235, USA., Gao Y; Institute of Imaging Science, Vanderbilt University, Nashville, TN 37235, USA; Biomedical Engineering, Vanderbilt University, Nashville, TN 37235, USA., Landman BA; Electrical Engineering, Vanderbilt University, Nashville, TN 37235, USA; Institute of Imaging Science, Vanderbilt University, Nashville, TN 37235, USA; Radiology and Radiological Sciences, Vanderbilt University, Nashville, TN 37235, USA; Biomedical Engineering, Vanderbilt University, Nashville, TN 37235, USA.
Source:
NeuroImage [Neuroimage] 2016 Jan 01; Vol. 124 (Pt B), pp. 1097-1101. Date of Electronic Publication: 2015 May 16.
Publication Type:
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
Language:
English
Journal Info:
Publisher: Academic Press Country of Publication: United States NLM ID: 9215515 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1095-9572 (Electronic) Linking ISSN: 10538119 NLM ISO Abbreviation: Neuroimage Subsets: MEDLINE
Imprint Name(s):
Original Publication: Orlando, FL : Academic Press, c1992-
MeSH Terms:
Databases, Factual* , Multimodal Imaging* , Neuroimaging*, Information Dissemination/*methods, Access to Information ; Electronic Data Processing ; Humans ; Quality Control ; Software
References:
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Grant Information:
UL1 TR000445 United States TR NCATS NIH HHS; R01 EY023240 United States EY NEI NIH HHS; 5R01MH098098 United States MH NIMH NIH HHS; R21 EY024036 United States EY NEI NIH HHS; R21EY024036 United States EY NEI NIH HHS; U01 CA152662 United States CA NCI NIH HHS; 2 UL1 TR000445-06 United States TR NCATS NIH HHS; 5T32EY007135 United States EY NEI NIH HHS; UL1 RR024975 United States RR NCRR NIH HHS; UL1 RR024975-01 United States RR NCRR NIH HHS; R01 MH098098 United States MH NIMH NIH HHS; T32 EY007135 United States EY NEI NIH HHS
Entry Date(s):
Date Created: 20150520 Date Completed: 20160906 Latest Revision: 20190315
Update Code:
20250114
PubMed Central ID:
PMC4646735
DOI:
10.1016/j.neuroimage.2015.05.021
PMID:
25988229
Database:
MEDLINE

Further Information

The Vanderbilt University Institute for Imaging Science (VUIIS) Center for Computational Imaging (CCI) has developed a database built on XNAT housing over a quarter of a million scans. The database provides framework for (1) rapid prototyping, (2) large scale batch processing of images and (3) scalable project management. The system uses the web-based interfaces of XNAT and REDCap to allow for graphical interaction. A python middleware layer, the Distributed Automation for XNAT (DAX) package, distributes computation across the Vanderbilt Advanced Computing Center for Research and Education high performance computing center. All software are made available in open source for use in combining portable batch scripting (PBS) grids and XNAT servers.
(Copyright © 2015 Elsevier Inc. All rights reserved.)