• Gos: a declarative library for...

Treffer: Gos: a declarative library for interactive genomics visualization in Python.

Title:
Gos: a declarative library for interactive genomics visualization in Python.
Authors:
Manz T; Department of Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA., L'Yi S; Department of Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA., Gehlenborg N; Department of Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA.
Source:
Bioinformatics (Oxford, England) [Bioinformatics] 2023 Jan 01; Vol. 39 (1).
Publication Type:
Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.
Language:
English
Journal Info:
Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE
Imprint Name(s):
Original Publication: Oxford : Oxford University Press, c1998-
MeSH Terms:
Computational Biology* , Geese*, Animals ; Genomics ; Genome ; Gene Library ; Software
References:
IEEE Trans Vis Comput Graph. 2022 Oct 03;PP:. (PMID: 36191105)
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J Comput Biol. 2017 May;24(5):447-449. (PMID: 28437135)
Bioinformatics. 2023 Jan 1;39(1):. (PMID: 36648320)
IEEE Trans Vis Comput Graph. 2022 Jan;28(1):140-150. (PMID: 34596551)
Genome Biol. 2018 Aug 24;19(1):125. (PMID: 30143029)
Comput Graph Forum. 2019 Jun;38(3):781-805. (PMID: 31768085)
Genome Biol. 2016 Apr 12;17:66. (PMID: 27072794)
Genome Res. 2002 Jun;12(6):996-1006. (PMID: 12045153)
Brief Bioinform. 2013 Mar;14(2):178-92. (PMID: 22517427)
Bioinformatics. 2021 Jul 01;:. (PMID: 34196689)
Nucleic Acids Res. 2018 Jan 4;46(D1):D1062-D1067. (PMID: 29165669)
Grant Information:
UM1 HG011536 United States HG NHGRI NIH HHS; DGE1745303 National Science Foundation; R01 HG011773 United States HG NHGRI NIH HHS; U01 CA200059 United States CA NCI NIH HHS
Entry Date(s):
Date Created: 20230123 Date Completed: 20230203 Latest Revision: 20230222
Update Code:
20250114
PubMed Central ID:
PMC9891240
DOI:
10.1093/bioinformatics/btad050
PMID:
36688709
Database:
MEDLINE

Weitere Informationen

Summary: Gos is a declarative Python library designed to create interactive multiscale visualizations of genomics and epigenomics data. It provides a consistent and simple interface to the flexible Gosling visualization grammar. Gos hides technical complexities involved with configuring web-based genome browsers and integrates seamlessly within computational notebooks environments to enable new interactive analysis workflows.
Availability and Implementation: Gos is released under the MIT License and available on the Python Package Index (PyPI). The source code is publicly available on GitHub (https://github.com/gosling-lang/gos), and documentation with examples can be found at https://gosling-lang.github.io/gos.
(© The Author(s) 2023. Published by Oxford University Press.)