Treffer: BioPipeline Creator-a user-friendly Java-based GUI for managing and customizing biological data pipelines.

Title:
BioPipeline Creator-a user-friendly Java-based GUI for managing and customizing biological data pipelines.
Authors:
Maia Cordeiro C; Faculty of Computing, Federal University of Pará campus Castanhal, Pará, Brazil., da Silva Moia G; Postgraduate Program in Applied Computing, Federal University of Pará campus Tucuruí Pará, Tucuruí, Brazil., de Oliveira MS; Federal Institute of Pará campus Tucuruí, Pará, Brazil., da Silva E Silva L; Center of Genomics and System Biologics, Federal University of Pará, Belém, Pará, Brazil., Cruz Schneider MP; Center of Genomics and System Biologics, Federal University of Pará, Belém, Pará, Brazil., Costa SS; Biological Engineering Laboratory, Guamá Science and Technology Park, Belém, Pará, Brazil., Baraúna RA; Biological Engineering Laboratory, Guamá Science and Technology Park, Belém, Pará, Brazil., das Graças DA; Biological Engineering Laboratory, Guamá Science and Technology Park, Belém, Pará, Brazil., Silva A; Biological Engineering Laboratory, Guamá Science and Technology Park, Belém, Pará, Brazil., de Oliveira Veras AA; Biological Engineering Laboratory, Guamá Science and Technology Park, Belém, Pará, Brazil. allanveras@ufpa.br.
Source:
Scientific reports [Sci Rep] 2024 Jul 17; Vol. 14 (1), pp. 16572. Date of Electronic Publication: 2024 Jul 17.
Publication Type:
Journal Article
Language:
English
Journal Info:
Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN: 2045-2322 (Electronic) Linking ISSN: 20452322 NLM ISO Abbreviation: Sci Rep Subsets: MEDLINE
Imprint Name(s):
Original Publication: London : Nature Publishing Group, copyright 2011-
MeSH Terms:
Software* , Computational Biology*/methods , User-Computer Interface*, Programming Languages ; High-Throughput Nucleotide Sequencing/methods ; Humans
Comments:
Erratum in: Sci Rep. 2024 Oct 15;14(1):24150. doi: 10.1038/s41598-024-75675-9. (PMID: 39406829)
References:
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Contributed Indexing:
Keywords: Bioinformatics; Customized pipeline; Research reproducibility
Entry Date(s):
Date Created: 20240717 Date Completed: 20240717 Latest Revision: 20241018
Update Code:
20250114
PubMed Central ID:
PMC11255246
DOI:
10.1038/s41598-024-67409-8
PMID:
39019939
Database:
MEDLINE

Weitere Informationen

Bioinformatics tools are essential for performing analyses in the omics sciences. Given the numerous experimental opportunities arising from advances in the field of omics and easier access to high-throughput sequencing platforms, these tools play a fundamental role in research projects. Despite the considerable progress made possible by the development of bioinformatics tools, some tools are tailored to specific analytical goals, leading to challenges for non-bioinformaticians who need to integrate the results of these specific tools into a customized pipeline. To solve this problem, we have developed the BioPipeline Creator, a user-friendly Java-based GUI that allows different software tools to be integrated into the repertoire while ensuring easy user interaction via an accessible graphical interface. Consisting of client and server software components, BioPipeline Creator provides an intuitive graphical interface that simplifies the use of various bioinformatics tools for users without advanced computer skills. It can run on less sophisticated devices or workstations, allowing users to keep their operating system without having to switch to another compatible system. The server is responsible for the processing tasks and can perform the analysis in the user's local or remote network structure. Compatible with the most important operating systems, available at https://github.com/allanverasce/bpc.git .
(© 2024. The Author(s).)