Treffer: PlantCircRNA: a comprehensive database for plant circular RNAs.

Title:
PlantCircRNA: a comprehensive database for plant circular RNAs.
Authors:
He S; Agricultural Big Data Research Center, College of Information Science and Engineering, Shandong Agricultural University, Taian 271018, China., Bing J; Agricultural Big Data Research Center, College of Information Science and Engineering, Shandong Agricultural University, Taian 271018, China., Zhong Y; Agricultural Big Data Research Center, College of Information Science and Engineering, Shandong Agricultural University, Taian 271018, China., Zheng X; Agricultural Big Data Research Center, College of Information Science and Engineering, Shandong Agricultural University, Taian 271018, China., Zhou Z; Agricultural Big Data Research Center, College of Information Science and Engineering, Shandong Agricultural University, Taian 271018, China., Wang Y; Agricultural Big Data Research Center, College of Information Science and Engineering, Shandong Agricultural University, Taian 271018, China., Hu J; Agricultural Big Data Research Center, College of Information Science and Engineering, Shandong Agricultural University, Taian 271018, China., Sun X; Agricultural Big Data Research Center, College of Information Science and Engineering, Shandong Agricultural University, Taian 271018, China.
Source:
Nucleic acids research [Nucleic Acids Res] 2025 Jan 06; Vol. 53 (D1), pp. D1595-D1605.
Publication Type:
Journal Article
Language:
English
Journal Info:
Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE
Imprint Name(s):
Publication: 1992- : Oxford : Oxford University Press
Original Publication: London, Information Retrieval ltd.
MeSH Terms:
RNA, Circular*/genetics , RNA, Plant*/genetics , RNA, Plant*/metabolism , Plants*/genetics , Databases, Nucleic Acid*, Databases, Genetic ; Sequence Analysis, RNA/methods ; Stress, Physiological/genetics
Grant Information:
32070684 National Natural Science Foundation of China; Project of Shandong Province Higher Educational Program for Introduction and Cultivation of Young Innovative Talents in 2021
Substance Nomenclature:
0 (RNA, Circular)
0 (RNA, Plant)
Entry Date(s):
Date Created: 20240827 Date Completed: 20250108 Latest Revision: 20250116
Update Code:
20250117
PubMed Central ID:
PMC11701686
DOI:
10.1093/nar/gkae709
PMID:
39189447
Database:
MEDLINE

Weitere Informationen

Circular RNAs (circRNAs) represent recently discovered novel regulatory non-coding RNAs. While they are present in many eukaryotes, there has been limited research on plant circRNAs. We developed PlantCircRNA (https://plant.deepbiology.cn/PlantCircRNA/) to fill this gap. The two most important features of PlantCircRNA are (i) it incorporates circRNAs from 94 plant species based on 39 245 RNA-sequencing samples and (ii) it imports the original AtCircDB and CropCircDB databases. We manually curated all circRNAs from published articles, and imported them into the database. Furthermore, we added detailed information of tissue as well as abiotic stresses to the database. To help users understand these circRNAs, the database includes a detection score to measure their consistency and a naming system following the guidelines recently proposed for eukaryotes. Finally, we developed a comprehensive platform for users to visualize, analyze, and download data regarding specific circRNAs. This resource will serve as a home for plant circRNAs and provide the community with unprecedented insights into these mysterious molecule.
(© The Author(s) 2024. Published by Oxford University Press on behalf of Nucleic Acids Research.)