Treffer: (Co)homology cycle-match for large-scale persistence bootstrapping

Cycle matching for distributed topological bootstrapping Releave v1.0.0-beta is the public (and pre-publication) pre-release of this repository set to solicit/encourage feedback, raised issues, and pull requests from potential users. This repository is a fork of Song and Garcia-Redondo's interval-matching repo that has been streamlined/tailored to cycle-matching in the bootstrapping case for large-scale distributed computations. Fork contributions Fork contributes new functionality and makes significant changes to the code structure: Functionality generalized to accept arbitrary (pre-computed) distance metrics additional utilities for cycle registration over data bootstraps integration of cycle matching with statistical permutation testing new modules for computation of Wasserstein variants new visualizations of aggregated statistcs and distributions of bootstrapped cycles new toy examples (and corresponding manipulations) for validation and exploration Structure split cycle-matching implementation into modular structure re-factored into Pythonic functional programming style optimized for integration with high-performance computing (HPC) environment ; If you use this software, please cite it as below.