Treffer: MutationFinder: a high-performance system for extracting point mutation mentions from text
Title:
MutationFinder: a high-performance system for extracting point mutation mentions from text
Authors:
Source:
Bioinformatics (Oxford. Print). 23(14):1862-1865
Publisher Information:
Oxford: Oxford University Press, 2007.
Publication Year:
2007
Physical Description:
print, 1/4 p
Original Material:
INIST-CNRS
LGMI
LGMI
Subject Terms:
Bioinformatics, Bioinformatique, Sciences biologiques et medicales, Biological and medical sciences, Sciences biologiques fondamentales et appliquees. Psychologie, Fundamental and applied biological sciences. Psychology, Generalites, General aspects, Mathématiques biologiques. Statistiques. Modèles. Métrologie. Informatique en biologie (généralités), Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects), Bioinformatique, Bioinformatics, Bioinformática, Extraction, Extracción, Fouille texte, Text mining, Explotacion texto, Information biomédicale, Biomedical information, Información biomédical, Langage JAVA, JAVA language, Lenguaje JAVA, Littérature, Literature, Literatura, Mutation ponctuelle, Point mutation, Mutación puntual, Note application, Scope note, Nota aplicación, Performance, Rendimiento, Programme ordinateur, Computer program, Programa informático, Langage PERL, Langage Python
Document Type:
Fachzeitschrift
Article
File Description:
text
Language:
English
Author Affiliations:
Department of Biochemistry and Molecular Genetics, University of Colorado Health Sciences Center, Aurora, CO, United States
Center for Computational Pharmacology, University of Colorado Health Sciences Center, Aurora, CO, United States
Motorola Mobile Devices, Libertyville, IL, United States
Department of Computer Science, University of Colorado at Boulder, Boulder, CO, United States
Department of Linguistics, University of Colorado at Boulder, Boulder, CO, United States
Center for Computational Pharmacology, University of Colorado Health Sciences Center, Aurora, CO, United States
Motorola Mobile Devices, Libertyville, IL, United States
Department of Computer Science, University of Colorado at Boulder, Boulder, CO, United States
Department of Linguistics, University of Colorado at Boulder, Boulder, CO, United States
ISSN:
1367-4803
Rights:
Copyright 2008 INIST-CNRS
CC BY 4.0
Sauf mention contraire ci-dessus, le contenu de cette notice bibliographique peut être utilisé dans le cadre d’une licence CC BY 4.0 Inist-CNRS / Unless otherwise stated above, the content of this bibliographic record may be used under a CC BY 4.0 licence by Inist-CNRS / A menos que se haya señalado antes, el contenido de este registro bibliográfico puede ser utilizado al amparo de una licencia CC BY 4.0 Inist-CNRS
CC BY 4.0
Sauf mention contraire ci-dessus, le contenu de cette notice bibliographique peut être utilisé dans le cadre d’une licence CC BY 4.0 Inist-CNRS / Unless otherwise stated above, the content of this bibliographic record may be used under a CC BY 4.0 licence by Inist-CNRS / A menos que se haya señalado antes, el contenido de este registro bibliográfico puede ser utilizado al amparo de una licencia CC BY 4.0 Inist-CNRS
Notes:
Biological sciences. Generalities. Modelling. Methods
Generalities in biological sciences
Generalities in biological sciences
Accession Number:
edscal.19000160
Database:
PASCAL Archive
Weitere Informationen
Discussion of point mutations is ubiquitous in biomedical literature, and manually compiling databases or literature on mutations in specific genes or proteins is tedious. We present an open-source, rule-based system, MutationFinder, for extracting point mutation mentions from text. On blind test data, it achieves nearly perfect precision and a markedly improved recall over a baseline. Availability: MutationFinder, along with a high-quality gold standard data set, and a scoring script for mutation extraction systems have been made publicly available. Implementations, source code and unit tests are available in Python, Perl and Java. MutationFinder can be used as a stand-alone script, or imported by other applications.