Treffer: Penalized mixtures of factor analyzers with application to clustering high-dimensional microarray data

Title:
Penalized mixtures of factor analyzers with application to clustering high-dimensional microarray data
Source:
Bioinformatics (Oxford. Print). 26(4):501-508
Publisher Information:
Oxford: Oxford University Press, 2010.
Publication Year:
2010
Physical Description:
print, 1/2 p
Original Material:
INIST-CNRS
Document Type:
Fachzeitschrift Article
File Description:
text
Language:
English
Author Affiliations:
Division of Biostatistics, School of Public Health, University of Minnesota, Minneapolis, MN, United States
School of Statistics, University of Minnesota, Minneapolis, MN, United States
ISSN:
1367-4803
Rights:
Copyright 2015 INIST-CNRS
CC BY 4.0
Sauf mention contraire ci-dessus, le contenu de cette notice bibliographique peut être utilisé dans le cadre d’une licence CC BY 4.0 Inist-CNRS / Unless otherwise stated above, the content of this bibliographic record may be used under a CC BY 4.0 licence by Inist-CNRS / A menos que se haya señalado antes, el contenido de este registro bibliográfico puede ser utilizado al amparo de una licencia CC BY 4.0 Inist-CNRS
Notes:
Biological sciences. Generalities. Modelling. Methods

Generalities in biological sciences
Accession Number:
edscal.22431770
Database:
PASCAL Archive

Weitere Informationen

Motivation: Model-based clustering has been widely used, e.g. in microarray data analysis. Since for high-dimensional data variable selection is necessary, several penalized model-based clustering methods have been proposed tørealize simultaneous variable selection and clustering. However, the existing methods all assume that the variables are independent with the use of diagonal covariance matrices. Results: To model non-independence of variables (e.g. correlated gene expressions) while alleviating the problem with the large number of unknown parameters associated with a general non-diagonal covariance matrix, we generalize the mixture of factor analyzers to that with penalization, which, among others, can effectively realize variable selection. We use simulated data and real microarray data to illustrate the utility and advantages of the proposed method over several existing ones.