Treffer: FASER: a tool for vectorial point spread function simulation with applications in stimulated emission depletion microscopy

Title:
FASER: a tool for vectorial point spread function simulation with applications in stimulated emission depletion microscopy
Contributors:
Interdisciplinary Institute for Neuroscience / Institut interdisciplinaire de neurosciences [Bordeaux] (IINS), Université de Bordeaux (UB)-Centre National de la Recherche Scientifique (CNRS), University of Linz - Johannes Kepler Universität Linz (JKU), Laboratoire Photonique, Numérique et Nanosciences (LP2N), Université de Bordeaux (UB)-Institut d'Optique Graduate School (IOGS)-Centre National de la Recherche Scientifique (CNRS), University Medical Center Göttingen (UMG)
Source:
Neurophotonics. 12(01):1884-1894
Publisher Information:
CCSD; Society of Photo-optical Instrumentation Engineers (SPIE), 2025.
Publication Year:
2025
Collection:
collection:INSERM
collection:IOGS
collection:CNRS
collection:LP2N
collection:TDS-MACS
collection:UNIVERSITE-BORDEAUX
collection:IINS
Original Identifier:
PUBMED: 39944080
PUBMEDCENTRAL: PMC11817813
HAL: hal-05373668
Document Type:
Zeitschrift article<br />Journal articles
Language:
English
ISSN:
2329-423X
2329-4248
Relation:
info:eu-repo/semantics/altIdentifier/doi/10.1117/1.NPh.12.1.017801; info:eu-repo/semantics/altIdentifier/pmid/39944080
DOI:
10.1117/1.NPh.12.1.017801
Rights:
info:eu-repo/semantics/OpenAccess
URL: http://creativecommons.org/licenses/by/
Accession Number:
edshal.hal.05373668v1
Database:
HAL

Weitere Informationen

We introduce FASER, a software package designed to simulate the excitation point spread functions (PSFs) of microscopes. It is written in Python as a plugin for the open-source platform Napari. Using a full-vectorial computational approach to simulate the electromagnetic fields within the focal region makes precise predictions and allows detailed analyses of excitation PSFs. FASER is intended as a pedagogical tool enabling users to explore the impacts of various geometrical and optical parameters of practical importance on the performance of the microscope. It supports the modeling of complex beam profiles, including donut and bottle-shaped beams, which are commonly used in advanced microscopy techniques such as stimulated emission depletion (STED) microscopy. Through specific simulations and accessible illustrations, we showcase FASER’s capabilities in capturing characteristic features of STED microscopy, making it a practical resource for researchers and students in optical microscopy to explore and optimize high-resolution imaging techniques.