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121

OpenLB User Guide: Associated with Release 1.6 of the Code
Kummerländer, Adrian ; Avis, Samuel J. ; Kusumaatmaja, Halim ; et al.

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122

MotifbreakR v2: extended capability and database integration
Coetzee, Simon G. ; Hazelett, Dennis J.

Quantitative Biology - G... Quantitative Biology - Q...
Report
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123

motifbreakR v2: expanded variant analysis including indels and integrated evidence from transcription factor binding databases.
Coetzee SG ; Hazelett DJ
Publisher: Oxford University Press Country of Publication: England NLM ID: 9918282081306676 Publication Model: eCollection Cited Medium: Internet ISSN: 2635-0041 (Electronic) Linking ISSN: 26350041 NLM ISO Abbreviation: Bioinform Adv Subsets: PubMed not MEDLINE

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124

scDAPP: a comprehensive single-cell transcriptomics analysis pipeline optimized for cross-group comparison.
Ferrena A ; Zheng XY ; Jackson K ; et al.
Publisher: Oxford University Press Country of Publication: England NLM ID: 101756213 Publication Model: eCollection Cited Medium: Internet ISSN: 2631-9268 (Electronic) Linking ISSN: 26319268 NLM ISO Abbreviation: NAR Genom Bioinform Subsets: PubMed not MEDLINE

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125

refseqR: an R package for common computational operations with records on RefSeq collection.
Die JV
Publisher: Oxford University Press Country of Publication: England NLM ID: 9918282081306676 Publication Model: eCollection Cited Medium: Internet ISSN: 2635-0041 (Electronic) Linking ISSN: 26350041 NLM ISO Abbreviation: Bioinform Adv Subsets: PubMed not MEDLINE

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126

Bootstrap Evaluation of Association Matrices (BEAM) for Integrating Multiple Omics Profiles with Multiple Outcomes.
Seffernick AE ; Cao X ; Cheng C ; et al.
Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

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127

A Path Less Traveled: Reimagining Software Engineering Automation via a Neurosymbolic Paradigm
Antonio Mastropaolo ; Denys Poshyvanyk
Proceedings of the 33rd ACM International Conference on the Foundations of Software Engineering. :1358-1362

Software Engineering (cs... FOS: Computer and inform... Computer Science - Softw...
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128

ydata-profiling: Accelerating data-centric AI with high-quality data
Clemente, Fabiana ; Ribeiro, Gonçalo Martins ; Quemy, Alexandre ; et al.
In Neurocomputing 14 October 2023 554

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129

hyperbox-brain: A Python toolbox for hyperbox-based machine learning algorithms
Khuat, Thanh Tung ; Gabrys, Bogdan
In SoftwareX July 2023 23

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130

MetaDrive: Composing Diverse Driving Scenarios for Generalizable Reinforcement Learning
Quanyi Li ; Zhenghao Peng ; Lan Feng ; et al.
IEEE Transactions on Pattern Analysis and Machine Intelligence. :1-14

FOS: Computer and inform... Computer Science - Machi... Computer Science - Robot... 0502 economics and busin... 05 social sciences 0202 electrical engineer... …
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131

HybridRec: A recommender system for tagging GitHub repositories.
Di Rocco, Juri ; Di Ruscio, Davide ; Di Sipio, Claudio ; et al.
Applied Intelligence; Apr2023, Vol. 53 Issue 8, p9708-9730, 23p

RECOMMENDER systems BAYESIAN analysis INSTITUTIONAL repositori... STOCHASTIC systems CONSTRUCTION projects
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132

An expectation–maximization framework for comprehensive prediction of isoform-specific functions.
Karlebach, Guy ; Carmody, Leigh ; Sundaramurthi, Jagadish Chandrabose ; et al.
Bioinformatics. Apr2023, Vol. 39 Issue 4, p1-7. 7p.

GENE ontology RNA sequencing HUMAN genes SOURCE code FORECASTING
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133

AdmixPipe v3: facilitating population structure delimitation from SNP data.
Mussmann, Steven M ; Douglas, Marlis R ; Chafin, Tyler K ; et al.
Bioinformatics Advances. 2023, Vol. 3 Issue 1, p1-4. 4p.

SINGLE nucleotide polymo... GENE clusters INTEGRATED software COMPUTATIONAL biology BIOINFORMATICS
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134

Experimental observation of a time rondeau crystal
Moon, Leo Joon Il ; Schindler, Paul Manuel

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135

aPEAR: an R package for autonomous visualization of pathway enrichment networks.
Kerseviciute, Ieva ; Gordevicius, Juozas
Bioinformatics. Nov2023, Vol. 39 Issue 11, p1-3. 3p.

DATA visualization SOURCE code
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136

nf-core/circrna: a portable workflow for the quantification, miRNA target prediction and differential expression analysis of circular RNAs.
Digby, Barry ; Finn, Stephen P. ; Ó Broin, Pilib
BMC Bioinformatics. 1/24/2023, Vol. 24 Issue 1, p1-15. 15p.

CIRCULAR RNA GENE expression RNA analysis MICRORNA WORKFLOW NON-coding RNA
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137

YaHS: yet another Hi-C scaffolding tool.
Zhou, Chenxi ; McCarthy, Shane A ; Durbin, Richard ; et al.

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138

xlogit: An open-source Python package for GPU-accelerated estimation of Mixed Logit models
Arteaga, Cristian ; Park, Jee Woong ; Beeramoole, Prithvi Bhat ; et al.
Journal of Choice Modelling

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139

hyperbox-brain: A Toolbox for Hyperbox-based Machine Learning Algorithms
Khuat, Thanh Tung ; Gabrys, Bogdan ; Khuat, Thanh Tung ; et al.

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